cigar-sashimi
Docs
Input
BAM file
(or drop BAM+BAI together)
Choose BAM file
BAI index file
Choose BAI file
Region
Actions
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Reset
Reset
Advanced (BAM processing)
These parameters are applied during BAM processing by the Rust core. Changing them requires clicking
Plot
again to re-process.
Min MAPQ
Min clip length
Min insertion length
Exclude SAM flags (hex) ⓘ
0x4·0x100·0x800 excluded
Annotations (optional)
GTF annotation
Choose GTF file
Assembly GTF
Choose assembly GTF file
Highlight
novel exon
ⓘ
–
includ. first/last exon
ⓘ
|
novel intron
ⓘ
Filters
(applied live without re-processing)
Junction
Reads
Size (bp)
Cov ratio
Deletion
Reads
Size (bp)
Cov ratio
Insertion
Reads
Size (bp)
Cov ratio
Collapse
ⓘ
Softclip
Reads
Size (bp)
Cov ratio