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Publish Python packages to PyPI (pip)
Published:
A step-by-step pipeline for uploading and publishing a Python package to PyPI that can be installed with pip. This pipeline includes the repo structure, py project configuration, building and publishing package.
Strandness of RNA-seq and Transcripts Explained
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Two posts by Griffith Lab and by Hong Zheng are already pretty comprehensive in describing the strandness parameters of many tools. Here I make some notes for my own records.
Anaconda getting started
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This is an (oversimplified) tutorial on getting started on conda. It works for Linux and macOS. All scripts are in bash.
Tutorial: RNA-seq short variant calling using GATK4
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GATK is powerful. However, running it may not be as easy. People, especially bioinformatics beginners are often overwhelmed by its powerfulness and complexity.