Sashimi plot using CIGAR of read alignments. Implemented in rust with WebAssembly and CLI interfaces.
Amaranth
A single-cell transcript assembler that discriminatively models UMI reads and internal reads.
TENNIS
An algorithm that identifies and augments missing isoforms from transcriptome annotations. Based on isoform evolution — no additional RNA-Seq input required.
Anchorage
A synthetic long read (SLR) assembler for anchor-labelled SLR data. Robust to sequencing artifacts and errors under high sequencing depth.
Altai
An allele-specific transcript assembler that assigns SNPs to their correct haplotype phases during transcript assembly.
