Strandness of RNA-seq and Transcripts Explained
Published:
Two posts by Griffith Lab and by Hong Zheng are already pretty comprehensive in describing the strandness parameters of many tools. Here I make some notes for my own records.
Posts by Tags
RNA-seq
conda
Anaconda getting started
Published:
This is an (oversimplified) tutorial on getting started on conda. It works for Linux and macOS. All scripts are in bash.
gatk
Tutorial: RNA-seq short variant calling using GATK4
Published:
GATK is powerful. However, running it may not be as easy. People, especially bioinformatics beginners are often overwhelmed by its powerfulness and complexity.
pipline
Tutorial: RNA-seq short variant calling using GATK4
Published:
GATK is powerful. However, running it may not be as easy. People, especially bioinformatics beginners are often overwhelmed by its powerfulness and complexity.
publication
Publish Python packages to PyPI (pip)
Published:
A step-by-step pipeline for uploading and publishing a Python package to PyPI that can be installed with pip. This pipeline includes the repo structure, py project configuration, building and publishing package.
python
Publish Python packages to PyPI (pip)
Published:
A step-by-step pipeline for uploading and publishing a Python package to PyPI that can be installed with pip. This pipeline includes the repo structure, py project configuration, building and publishing package.
tool
Anaconda getting started
Published:
This is an (oversimplified) tutorial on getting started on conda. It works for Linux and macOS. All scripts are in bash.
transcriptome
Strandness of RNA-seq and Transcripts Explained
Published:
Two posts by Griffith Lab and by Hong Zheng are already pretty comprehensive in describing the strandness parameters of many tools. Here I make some notes for my own records.
tutorial
Publish Python packages to PyPI (pip)
Published:
A step-by-step pipeline for uploading and publishing a Python package to PyPI that can be installed with pip. This pipeline includes the repo structure, py project configuration, building and publishing package.
Anaconda getting started
Published:
This is an (oversimplified) tutorial on getting started on conda. It works for Linux and macOS. All scripts are in bash.
Tutorial: RNA-seq short variant calling using GATK4
Published:
GATK is powerful. However, running it may not be as easy. People, especially bioinformatics beginners are often overwhelmed by its powerfulness and complexity.